Procedure
I: Chelex Isolation of DNA from Cheek Cells
Reagents |
Equipment
& Supplies |
Shared
Items |
Saline
solution (0.9% NaCl), 10 ml
10% Chelex®, 100 µl
|
15
ml test tube, polypropylene
Paper cup
1.5 ml test tubes, polypropylene
1 ml transfer pipet or 100-1,000 µl micropipet and tip
Cup of ice (optional) |
microcentrifuge
Boiling water bath, heat block, or thermal cycler |
Pre-Lab
Preparation
For each student, prepare and aliquot 10 ml 0.9% saline solution into
a 15 ml polypropylene culture tube. The formula is 0.9 g NaCl per 100
ml distilled or deionized water.
For each student, aliquot 100 µl 10% Chelex® suspension into a 1.5 ml
polypropylene tube. If using a thermal cyclcer for boiling, aliquot into
the appropriate 0.5 ml or 0.2 ml PCR tube. Be sure to shake the stock
tube (or draw liquid in and out of pipet tip several times) to re-suspend
the Chelex beads each time before pipetting a student aliquot.
A boiling water bath can be made using a beaker and a hot plate. Affix
a double layer of aluminum foil to the beaker, and use pencil or other
point to make holes for 1.5 ml test tubes.
Procedure
- Pour 10 ml of
the saline solution (0.9% NaCl) into mouth and vigorously swish for
30 seconds.
- Expel saline solution
into a paper cup.
- Swirl to mix cells
in the cup and transfer 1 ml (1000 µl) of the liquid to 1.5 ml tube.
- Place your sample
tube, together with other student samples, in a balanced configuration
in a microcentrifuge, and spin for 1 minute.
- Carefully pour
off supernatant into paper cup or sink. Be careful not to disturb the
cell pellet at the bottom of the test tube.
- Add 30 µl of saline
solution, and resuspend cells by pipetting in and out.
- Withdraw 30 µl
of cell suspension, and add to tube containing 100 µl of Chelex. Shake
well to mix.
- Boil cell sample
for 10 minutes. Use boiling water bath, heat block, or program thermal
cycler for 10 minutes at 99°C. Then, cool tube briefly on ice (optional).
- After boiling,
shake tube. Place in a balanced configuration in a microcentrifuge,
and spin for 1 minute.
- Store your sample
on ice or in the freezer until ready to begin Part II. Avoid cell pellet
when taking a sample for PCR.
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