../Download%20Adobe%20Acrobat%20PDF%20file.PROTOCOL

Procedure I: Chelex Isolation of DNA from Cheek Cells

Reagents Equipment & Supplies Shared Items
Saline solution (0.9% NaCl), 10 ml
10% Chelex®, 100 µl
15 ml test tube, polypropylene
Paper cup
1.5 ml test tubes, polypropylene
1 ml transfer pipet or 100-1,000 µl micropipet and tip
Cup of ice (optional)
microcentrifuge
Boiling water bath, heat block, or thermal cycler

Pre-Lab Preparation
For each student, prepare and aliquot 10 ml 0.9% saline solution into a 15 ml polypropylene culture tube. The formula is 0.9 g NaCl per 100 ml distilled or deionized water.
For each student, aliquot 100 µl 10% Chelex® suspension into a 1.5 ml polypropylene tube. If using a thermal cyclcer for boiling, aliquot into the appropriate 0.5 ml or 0.2 ml PCR tube. Be sure to shake the stock tube (or draw liquid in and out of pipet tip several times) to re-suspend the Chelex beads each time before pipetting a student aliquot.
A boiling water bath can be made using a beaker and a hot plate. Affix a double layer of aluminum foil to the beaker, and use pencil or other point to make holes for 1.5 ml test tubes.

Procedure

  1. Pour 10 ml of the saline solution (0.9% NaCl) into mouth and vigorously swish for 30 seconds.
  2. Expel saline solution into a paper cup.
  3. Swirl to mix cells in the cup and transfer 1 ml (1000 µl) of the liquid to 1.5 ml tube.
  4. Place your sample tube, together with other student samples, in a balanced configuration in a microcentrifuge, and spin for 1 minute.
  5. Carefully pour off supernatant into paper cup or sink. Be careful not to disturb the cell pellet at the bottom of the test tube.
  6. Add 30 µl of saline solution, and resuspend cells by pipetting in and out.
  7. Withdraw 30 µl of cell suspension, and add to tube containing 100 µl of Chelex. Shake well to mix.
  8. Boil cell sample for 10 minutes. Use boiling water bath, heat block, or program thermal cycler for 10 minutes at 99°C. Then, cool tube briefly on ice (optional).
  9. After boiling, shake tube. Place in a balanced configuration in a microcentrifuge, and spin for 1 minute.
  10. Store your sample on ice or in the freezer until ready to begin Part II. Avoid cell pellet when taking a sample for PCR.

2000, DNA Learning Center, Cold Spring Harbor Laboratory
Noncommercial, educational use only.
Kits available from Carolina Biological Supply Company.